Package index • TopKAT

All functions

TopKAT(): Topological Kernel Association Test (TopKAT)

cens: Event indicator vector cens

data1.df: Simulated data 1

data2.df: Simulated data 2

generate_connectivity(): Generate connectivity matrix

generate_rips(): Generate a list of persistence diagrams

plot_cell_connections(): Heatmap of cell-cell connections

plot_cells_with_scale(): Plot cells with radius value

plot_persistence(): Plot persistence diagrams

rips_similarity_matrix(): Calculate a similarity matrix based on the Rips filtration

scale_importance(): Quantifying the importance of scale

similarity_matrix(): Construct a pairwise similarity matrix

tnbc: MIBI Data from study in Triple Negative Breast Csancer

y: Outcome vector y